How to reach and find us:
on the MAP Building #7; ground floor - office rooms: 00.033 and 00.034
Attention !! Course Announcement !!
2st MIAP BioImage Analysis Workshop
Basic Introduction for Life Scientists into ImageJ/Fiji Processing
25th April – 27th April 2017 (two and a half day)
Center for Biological Systems Analysis (ZBSA)
Microscopy and Image Analysis Platform (MIAP), Freiburg Bioimaging Center (BIC), Konstanz
MIAP, the newly founded Microscopy and Image Analysis Platform Freiburg will establish a highly competitive joint network for scientific infrastructure by providing access to high-end microscopy and image analysis resources.
About the workshop: The 2nd MIAP Bioimage Analysis Workshop intends to provide life scientists without advanced knowledge in image analysis an introduction into basic and state-of-the-art concepts of digital image processing using ImageJ/Fiji. The course will cover object segmentation, counting, feature extraction and colocalization. The aim is to provide the participants a portfolio of knowledge and solutions for basic bioimage analysis tasks. The workshop will be restricted to a max of 10 attendees to ensure optimal working conditions and trainer support.
(http://imagej.net / http://imagej.net/Development / https://fiji.sc) represent the most widespread image analysis tools which are supported by a world-wide developer and user community. The open-source software is designed for scientific multi-dimensional images and is highly extensible, with thousands of plugins and scripts for performing a wide variety of tasks.
The registration fee of 50€ covers finger food and refreshments during the workshop.
Further information: download the program
Online registration is open now!! Click here
Deadline for registration: April, 10th 2017.
We hope to see you soon in Freiburg!
Your MIAP Coordination Team
LIC News: General
The LIC was successful in the DFG Call for "Core Facilities and Networks 2015" Freiburg has been awarded a grant over three years for realization of the Microscopy and Image Analysis Platform Freiburg (MIAP-Freiburg).
MIAP-Freiburg will establish a series of interdisciplinary seminars and workshops covering in great depth special topics in microscopy and related fields. The activities, which are arranged as a cooperation of academia and industry, are targeted towards scientific users of microscopical techniques in the life and material sciences, computer scientists in the area of image analysis and software development, engineers and physicists from basic research, instrument developers in the whole area of microscopy and finally staff from imaging facilities world-wide.
Moreover the LIC application as an "Advanced Light Microscopy
Multi Modal Single Sited Node" within EuroBioImaging was excellently reviewed by an independent International Evaluation Board and received the final ranking: Highly Recommended Expression of Interest for Euro-BioImaging Node. All the details of the review you find here.
The LIC is listed in the database Research Infrastructure Portal: RIsources of the German Research Foundation (DFG). For more details see here.
Overview of scientific publications from research groups done by using LIC infrastructure and support
Within the last five years (2010 – Oct 2015) the workgroups using the LIC infrastructure have published more than 256 publications (only 85% of the workgroups responded to our requests) containing images or data recorded in the LIC with a pooled number of 1943.9 Impact Factor points (mean 7.9 IF/per publication). This included 73 publications with an IF higher than 9, 51 publications IF >10 and 19 publications IF >15.
The majority of publications where in the field of Cell Biology (n=118, mean IF 8.5 ), followed by Developmental Biology (n=47, mean IF 8.1), Neurobiology (n=46, mean IF 7.3 ) and Plant Biology (n=21, mean IF 6.6). Structural Biology, connected with biological imaging is new covered in Freiburg since 2012 and therefore we reached here only n=3 but with a mean IF of 13.7
LIC General Information:
The Life Imaging Center (LIC) is a central core facility of the Albert-Ludwigs-University Freiburg open to members of all Faculties. Currently 250 active users from 6 Faculties (Biology; Medicine; Chemistry and Pharmacy; Mathematics and Physics; Environment and Natural Resources; and Engineering) are using the infrastructure of the LIC. The users come from app. 84 workgroups and the usage time of the microscopes in 2011 was about 23.000 hours. We have now approximately 60 - 80 new users per year and the same number leaving the facility. Outside users from Freiburg (Max Planck Institutes, Fraunhofer Gesellschaft) and from other universities are also welcome. For the details of application follow this link.
The LIC has now 14 rooms in the ZBSA with app. 400 m² (9 microscope rooms with 19 microscope set-ups, wet lab, large cell culture room, and large computer lab for 11 high-end workstations + 8 smaller desktop computers) plus 2 rooms with 3 LSMs (35 m²) in a neighboring building.
Take a Tour through the Life Imaging Center (LIC) (only for Windows Explorer)
Start the tour
The Life Imaging Center, which is now one of the largest facilities of that type in Germany, was founded in 2000 by W. Driever and R. Nitschke as the central project Z2 of the SFB 592 "Signaling mechanisms in embryogenesis and organogenesis". The LIC was originally located in the Institute of Biology I and moved in April 2008 into the new building of the Zentrum für Biosystemanalyse (ZBSA) in Habsburgerstr. 49. With the move into the ZBSA, the LIC also merged with the Imaging Core Facility of the Medical Faculty founded in 2003 by R. Nitschke and M. Frotscher. The LIC works tightly together and shares equipment and software licenses with the Imaging facility of Max Planck Institute for Immunbiology and Epigenetics (MPI-IE) in Freiburg.